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Ultimate Guide - The Best Open Source LLM for Scientific Research & Academia in 2025

Author
Guest Blog by

Elizabeth C.

Our definitive guide to the best open source large language models for scientific research and academia in 2025. We've partnered with research institutions, tested performance on academic benchmarks, and analyzed capabilities to uncover the most powerful models for scholarly work. From advanced reasoning and mathematical computation to multimodal research analysis and long-context document processing, these models excel in scientific rigor, accessibility, and real-world research applications—helping researchers and academic institutions advance their work with services like SiliconFlow. Our top three recommendations for 2025 are DeepSeek-R1, Qwen3-235B-A22B, and THUDM/GLM-4.1V-9B-Thinking—each chosen for their outstanding research capabilities, computational efficiency, and ability to push the boundaries of academic AI applications.



What are Open Source LLMs for Scientific Research & Academia?

Open source large language models for scientific research and academia are specialized AI systems designed to support scholarly work, research analysis, and educational applications. These models excel in complex reasoning, mathematical computation, scientific literature analysis, and multimodal data processing. They enable researchers to analyze vast datasets, generate research hypotheses, assist with peer review, and accelerate scientific discovery. By being open source, they foster collaboration within the research community, ensure transparency in academic applications, and democratize access to powerful AI tools that can advance scientific knowledge across disciplines.

DeepSeek-R1

DeepSeek-R1-0528 is a reasoning model powered by reinforcement learning (RL) that addresses the issues of repetition and readability. Prior to RL, DeepSeek-R1 incorporated cold-start data to further optimize its reasoning performance. It achieves performance comparable to OpenAI-o1 across math, code, and reasoning tasks, and through carefully designed training methods, it has enhanced overall effectiveness.

Subtype:
Reasoning Model
Developer:deepseek-ai

DeepSeek-R1: Premier Reasoning Model for Scientific Research

DeepSeek-R1-0528 is a state-of-the-art reasoning model powered by reinforcement learning that excels in scientific and mathematical reasoning tasks. With 671B parameters using MoE architecture and 164K context length, it achieves performance comparable to OpenAI-o1 across complex mathematical, coding, and reasoning challenges. The model incorporates cold-start data optimization and carefully designed training methods to enhance effectiveness in academic research scenarios, making it ideal for scientific hypothesis generation, mathematical proof assistance, and complex problem-solving in research environments.

Pros

  • Exceptional reasoning capabilities comparable to OpenAI-o1.
  • 671B parameter MoE architecture for complex scientific tasks.
  • 164K context length for processing long research documents.

Cons

  • Higher computational requirements due to large parameter count.
  • Premium pricing for extensive research workloads.

Why We Love It

  • It delivers unmatched reasoning performance for complex scientific problems, making it the gold standard for academic research requiring deep analytical thinking.

Qwen3-235B-A22B

Qwen3-235B-A22B is the latest large language model in the Qwen series, featuring a Mixture-of-Experts (MoE) architecture with 235B total parameters and 22B activated parameters. This model uniquely supports seamless switching between thinking mode (for complex logical reasoning, math, and coding) and non-thinking mode (for efficient, general-purpose dialogue). It demonstrates significantly enhanced reasoning capabilities, superior human preference alignment in creative writing, role-playing, and multi-turn dialogues.

Subtype:
Reasoning Model
Developer:Qwen3

Qwen3-235B-A22B: Advanced Academic Reasoning with Dual-Mode Flexibility

Qwen3-235B-A22B represents the pinnacle of academic-focused language models with its innovative dual-mode architecture. Featuring 235B total parameters with 22B activated through MoE design, it seamlessly switches between thinking mode for complex logical reasoning, mathematics, and coding, and non-thinking mode for efficient academic dialogue. The model demonstrates exceptional reasoning capabilities and supports over 100 languages, making it perfect for international research collaboration, multilingual academic writing, and complex scientific problem-solving across diverse research domains.

Pros

  • Dual-mode switching between deep reasoning and efficient dialogue.
  • 235B parameter MoE architecture with 22B active parameters.
  • Support for over 100 languages for global research collaboration.

Cons

  • Complex architecture may require learning curve for optimal use.
  • Higher resource requirements for thinking mode operations.

Why We Love It

  • Its unique dual-mode flexibility allows researchers to optimize between deep analytical thinking and efficient communication, perfect for diverse academic workflows.

THUDM/GLM-4.1V-9B-Thinking

GLM-4.1V-9B-Thinking is an open-source Vision-Language Model (VLM) jointly released by Zhipu AI and Tsinghua University's KEG lab, designed to advance general-purpose multimodal reasoning. Built upon the GLM-4-9B-0414 foundation model, it introduces a 'thinking paradigm' and leverages Reinforcement Learning with Curriculum Sampling (RLCS) to significantly enhance its capabilities in complex tasks.

Subtype:
Vision-Language Model
Developer:THUDM

THUDM/GLM-4.1V-9B-Thinking: Multimodal Research Excellence

GLM-4.1V-9B-Thinking is a breakthrough vision-language model specifically designed for academic and research applications. Jointly developed by Zhipu AI and Tsinghua University's KEG lab, this 9B-parameter model introduces a revolutionary 'thinking paradigm' enhanced by Reinforcement Learning with Curriculum Sampling (RLCS). Despite its compact size, it achieves state-of-the-art performance comparable to much larger 72B models on 18 benchmarks. The model excels in STEM problem-solving, video understanding, and long document analysis, handling 4K resolution images with arbitrary aspect ratios—making it ideal for scientific data analysis and research visualization.

Pros

  • Compact 9B parameters with performance matching larger models.
  • Excels in STEM problem-solving and scientific visualization.
  • Handles 4K resolution images with arbitrary aspect ratios.

Cons

  • Smaller parameter count may limit some complex reasoning tasks.
  • Focused primarily on vision-language tasks rather than pure text.

Why We Love It

  • It offers exceptional multimodal research capabilities in a cost-effective package, perfect for academic institutions with budget constraints but demanding research needs.

Scientific Research LLM Comparison

In this table, we compare 2025's leading open source LLMs for scientific research and academia, each with unique strengths for scholarly applications. DeepSeek-R1 provides unmatched reasoning power for complex scientific problems, Qwen3-235B-A22B offers flexible dual-mode operation for diverse research workflows, while GLM-4.1V-9B-Thinking delivers exceptional multimodal capabilities for visual research data. This comparison helps researchers choose the right AI partner for their specific academic goals.

Number Model Developer Subtype SiliconFlow PricingCore Research Strength
1DeepSeek-R1deepseek-aiReasoning Model$0.50-$2.18/M tokensPremier mathematical reasoning
2Qwen3-235B-A22BQwen3Reasoning Model$0.35-$1.42/M tokensDual-mode academic flexibility
3GLM-4.1V-9B-ThinkingTHUDMVision-Language Model$0.035-$0.14/M tokensMultimodal research excellence

Frequently Asked Questions

Our top three picks for scientific research and academia in 2025 are DeepSeek-R1, Qwen3-235B-A22B, and THUDM/GLM-4.1V-9B-Thinking. Each model was selected for their exceptional capabilities in scientific reasoning, mathematical computation, and research applications, representing the cutting edge of open source academic AI.

For complex mathematical reasoning and theoretical research, DeepSeek-R1 leads with its advanced reasoning capabilities. For multilingual research collaboration and flexible academic workflows, Qwen3-235B-A22B excels with its dual-mode architecture. For visual data analysis, scientific imaging, and multimodal research, GLM-4.1V-9B-Thinking provides the best combination of performance and cost-effectiveness.

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