What are Open Source LLMs for Biotech Research?
Open source LLMs for biotech research are large language models specifically optimized for scientific reasoning, data analysis, and complex problem-solving in biotechnology. These models leverage advanced architectures like Mixture-of-Experts (MoE) and reinforcement learning to process scientific literature, analyze experimental data, understand molecular structures, and assist in hypothesis generation. They enable biotech researchers to accelerate drug discovery, genomics analysis, protein structure prediction, and clinical research by providing powerful AI capabilities for text understanding, reasoning, multimodal analysis, and code generation—all while maintaining transparency and accessibility through open source licensing.
DeepSeek-R1
DeepSeek-R1-0528 is a reasoning model powered by reinforcement learning (RL) with 671 billion total parameters in a MoE architecture. It achieves performance comparable to OpenAI-o1 across math, code, and reasoning tasks. The model addresses issues of repetition and readability while incorporating cold-start data to optimize reasoning performance—making it ideal for complex biotech research tasks requiring deep analytical thinking and problem-solving.
DeepSeek-R1: Powerful Reasoning for Complex Biotech Analysis
DeepSeek-R1-0528 is a reasoning model powered by reinforcement learning (RL) that addresses the issues of repetition and readability. With 671 billion total parameters in a MoE architecture, it achieves performance comparable to OpenAI-o1 across math, code, and reasoning tasks. Prior to RL, DeepSeek-R1 incorporated cold-start data to further optimize its reasoning performance. Through carefully designed training methods, it has enhanced overall effectiveness in complex analytical tasks, making it particularly valuable for biotech research applications requiring sophisticated reasoning, hypothesis generation, data interpretation, and multi-step problem-solving across genomics, drug discovery, and clinical research domains.
Pros
- State-of-the-art reasoning capabilities comparable to OpenAI-o1.
- 671B parameter MoE architecture for powerful analysis.
- 164K context length handles extensive scientific documents.
Cons
- Higher computational requirements due to model size.
- Premium pricing at $2.18/M output tokens on SiliconFlow.
Why We Love It
- It delivers exceptional reasoning performance for complex biotech research challenges, from analyzing experimental data to generating novel hypotheses, with transparency and open-source accessibility.
Qwen3-235B-A22B
Qwen3-235B-A22B is a cutting-edge MoE model with 235B total parameters and 22B activated parameters, uniquely supporting seamless switching between thinking mode for complex reasoning and non-thinking mode for efficient dialogue. It demonstrates significantly enhanced reasoning capabilities, superior multilingual support across 100+ languages, and excellent agent capabilities for tool integration—ideal for diverse biotech research workflows.
Qwen3-235B-A22B: Versatile Intelligence for Biotech Innovation
Qwen3-235B-A22B is the latest large language model in the Qwen series, featuring a Mixture-of-Experts (MoE) architecture with 235B total parameters and 22B activated parameters. This model uniquely supports seamless switching between thinking mode (for complex logical reasoning, math, and coding) and non-thinking mode (for efficient, general-purpose dialogue). It demonstrates significantly enhanced reasoning capabilities, superior human preference alignment in creative writing, role-playing, and multi-turn dialogues. The model excels in agent capabilities for precise integration with external tools and supports over 100 languages and dialects with strong multilingual instruction following and translation capabilities. For biotech research, this versatility enables everything from analyzing scientific literature to generating research protocols and interfacing with laboratory information systems.
Pros
- Flexible thinking/non-thinking mode switching for varied tasks.
- 235B total parameters with efficient 22B activation.
- 131K context length for comprehensive document analysis.
Cons
- Not specialized exclusively for scientific domains.
- May require mode optimization for specific research tasks.
Why We Love It
- It offers unmatched versatility with dual-mode operation, enabling biotech researchers to switch seamlessly between deep reasoning for complex analysis and efficient processing for routine tasks—all with exceptional multilingual and tool integration capabilities.
GLM-4.5V
GLM-4.5V is a vision-language model with 106B total parameters and 12B active parameters, built on a MoE architecture. It processes diverse visual content including images, videos, and long documents with 3D-RoPE technology for enhanced spatial reasoning. The model features a 'Thinking Mode' switch and achieves state-of-the-art performance on 41 multimodal benchmarks—perfect for analyzing microscopy images, molecular structures, and scientific visualizations.
GLM-4.5V: Multimodal Intelligence for Visual Biotech Data
GLM-4.5V is the latest generation vision-language model (VLM) released by Zhipu AI. The model is built upon the flagship text model GLM-4.5-Air, which has 106B total parameters and 12B active parameters, and it utilizes a Mixture-of-Experts (MoE) architecture to achieve superior performance at a lower inference cost. Technically, GLM-4.5V introduces innovations like 3D Rotated Positional Encoding (3D-RoPE), significantly enhancing its perception and reasoning abilities for 3D spatial relationships. Through optimization across pre-training, supervised fine-tuning, and reinforcement learning phases, the model is capable of processing diverse visual content such as images, videos, and long documents, achieving state-of-the-art performance among open-source models of its scale on 41 public multimodal benchmarks. The model features a 'Thinking Mode' switch, allowing biotech researchers to flexibly choose between quick responses and deep reasoning when analyzing microscopy images, protein structures, cell cultures, medical imaging, and scientific diagrams.
Pros
- Advanced vision-language capabilities for scientific imaging.
- 3D-RoPE technology for spatial relationship understanding.
- Thinking Mode for flexible analysis depth control.
Cons
- 66K context length smaller than text-only alternatives.
- Requires visual data preprocessing for optimal results.
Why We Love It
- It bridges the gap between visual and textual scientific data, enabling biotech researchers to analyze microscopy images, molecular visualizations, and complex diagrams with the same AI that processes research papers and experimental protocols.
Biotech Research LLM Comparison
In this table, we compare 2025's leading open source LLMs for biotech research, each with unique strengths. DeepSeek-R1 delivers unmatched reasoning power for complex analytical tasks. Qwen3-235B-A22B offers versatile dual-mode operation with exceptional multilingual and tool integration capabilities. GLM-4.5V provides cutting-edge multimodal intelligence for analyzing visual scientific data. This comparison helps you select the optimal model for your specific biotech research requirements, from drug discovery to genomics analysis. All pricing shown is from SiliconFlow.
| Number | Model | Developer | Subtype | Pricing (SiliconFlow) | Core Strength |
|---|---|---|---|---|---|
| 1 | DeepSeek-R1 | deepseek-ai | Reasoning Model | $2.18/M output tokens | Exceptional reasoning & analysis |
| 2 | Qwen3-235B-A22B | Qwen3 | Reasoning & General | $1.42/M output tokens | Versatile dual-mode operation |
| 3 | GLM-4.5V | zai | Vision-Language | $0.86/M output tokens | Multimodal visual analysis |
Frequently Asked Questions
Our top three picks for biotech research in 2025 are DeepSeek-R1, Qwen3-235B-A22B, and GLM-4.5V. These models were selected for their exceptional capabilities in reasoning, multimodal analysis, and complex problem-solving—all critical requirements for advancing biotechnology research applications.
For complex analytical reasoning, data interpretation, and hypothesis generation, DeepSeek-R1 is the top choice with its 671B parameter MoE architecture and reinforcement learning optimization. For versatile research workflows requiring both deep reasoning and efficient processing with multilingual support, Qwen3-235B-A22B offers the best balance. For analyzing visual scientific data including microscopy images, molecular structures, and medical imaging, GLM-4.5V provides unmatched multimodal capabilities with 3D spatial understanding.